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Payroll Management System

Indian payroll changed. Your payroll system should have too.

The Code on Wages rewrote how basic pay, PF, gratuity and exit settlements are calculated. NavoraHR handles the new rules and the old ones, across every state you operate in, in a single monthly run.

No credit card. Setup in under a day.

4 min
average payroll run
28 states
statutory rules applied
13 modules
one employee record
Labour Codes 2025

The wage rules moved. We moved with them.

On 21 November 2025, four Labour Codes replaced 29 central labour statutes. Central Rules followed on 8 May 2026. For payroll, three changes do the real damage, and all three are structural rather than cosmetic.

The 50% wage rule

Basic pay plus dearness allowance must now make up at least half of total remuneration. Where allowances run higher, the excess is pulled back into wages for statutory purposes. PF, gratuity, bonus and leave encashment all recompute on the larger base.

NavoraHR models the new structure against your existing CTC, shows the revised liability per employee before you commit, and applies it from the cycle you choose.

48-hour exit settlement

Full and final settlement is now due within two working days of an employee leaving. A settlement that waits for next month’s payroll run no longer complies.

NavoraHR calculates notice pay, leave encashment, gratuity, recoveries and statutory dues on the day the exit is recorded, and releases an off-cycle payout without waiting for the cycle.

Rules that differ by state

Several states have notified final rules. Several have not. A company operating in four states is currently running four rule sets at once.

NavoraHR applies the correct rule set per employee based on work location, and updates each state as its notification lands.

Try the 50% wage rule on one salary

Basic pay + DA today₹21,000
50% wage floor₹30,000
Allowances added back₹9,000
Wage base for PF, gratuity, bonus and leave encashment₹30,000
Basic pay + DAAdded back50% floor

Illustrative: basic pay plus DA measured against total monthly remuneration. Statutory exclusions and state rules are applied in the product.

What’s included

Everything payroll actually needs.
Nothing it does not.

4 min
One-Click Run
Earnings, deductions, taxes and statutory contributions calculated in a single pass. Review once, approve, done.
Every cycle
Tax & Statutory
PF, ESI, PT, LWF and TDS computed to the correct slab, filed on schedule, updated when the law moves.
Same day
Digital Payslips
Branded payslips delivered the moment a run closes. Full history stays in the employee’s portal.
Every action
Full Audit Trail
Each calculation, override and approval logged with a timestamp and a name against it.
28 states
Multi-State Payroll
Jurisdiction rules applied per employee by work location. No parallel spreadsheets per state.
Every run
Payroll Revision History
Compare any two cycles, spot the variance, and reverse a run inside the cycle if you need to.
One go
Bulk Employee Import
Thousands of employees imported from Excel or your current system, with validations running as they land.
48 hours
Full & Final Settlement
Exit salary, leave encashment, gratuity and recoveries calculated on the day the exit is logged.
New
Every cycle
Variance Report
This month against last, employee by employee, with every movement explained before you approve.
New
All year
Tax Projection
Employees see their full-year liability from month one, not a February surprise.
New
Backdated
Arrears & Salary Revision
Increments, promotions and structure changes applied retrospectively, with arrears calculated across affected cycles.
New
One login
Multi-Entity Payroll
Separate legal entities, separate compliance registrations, one dashboard.
Admin
Pay Employees
Compliance
HRMS
Reports
Payroll · May 2026
₹23,50,000
Compliance automated
Your payroll has
been finalised.
Run Payroll
Run payroll

Close the cycle in one sitting.

Attendance, leave, LOP, overtime and reimbursements arrive on their own. Calculate, review the exceptions the system flags, approve, and transfer straight to your team’s bank accounts.

Pay full-time, contract, interns and freelancers in the same run
Process regular and off-cycle payroll without switching context
Maker-checker approval and a logged trail on every rupee
Hold, release or pro-rate any individual salary without breaking the run
My Payslips
Attendance
Tax Deductions
Reimbursements
May 2026 payslip
₹77,600
Download payslip
April 2026₹77,600
March 2026₹74,200
Payslips & self-service

Payslips deliver themselves.

Branded payslips generate and send the moment a run closes. The self-service portal answers the questions before they reach your HR inbox.

Payslips, tax breakdowns and Form 16 available on demand
Investment declarations submitted online, no Form 12BB chasing
Reimbursements settled instantly or bundled with salary
Leave applied for, balances checked, from any device
Projection
Declarations
Form 16
FY 2026–27 · projected tax
₹86,200
Old regime₹1,12,400
New regimeLower
Previous employer TDS₹24,000
Monthly TDS · ₹5,183
Income tax & TDS

Tax that stops being a February problem.

Most payroll teams discover their TDS shortfall in the last quarter and spend January reconciling. NavoraHR projects the full year from the first cycle and adjusts as declarations, proofs and revisions come in.

Old regime and new regime compared on each employee’s real numbers
Investment declarations and proof submission handled in the portal
Previous employer income and TDS absorbed for mid-year joiners
Monthly TDS computed under Section 192, with Form 24Q filed quarterly
Form 16 issued to every employee at year end, no manual assembly
Reimbursements
Claims
Advances
Pending reimbursements
₹42,300
Travel · Aarav S.Approved
Internet · Priya I.Approved
Client meal · Rohan K.Approved
Settle with May salary
Reimbursements & off-cycle

Expenses, settled on time.

Claims arrive from the app with receipts attached, move through approval, and go out with the next run. Or the same day, if waiting is not an option.

Employees raise claims from the mobile app
Reimburse instantly or bundle with salary
Off-cycle payouts for bonuses, arrears and final settlements
Loans and advances tracked, with recoveries scheduled across cycles
Registers
MIS
Challans
May 2026 · ready to export
Salary register
Bank advice file
PF ECR challan
Variance report
Cost & headcount MIS
Reports & registers

Every register, one click.

The salary register, payroll register, bank advice, statutory challans and MIS your finance team asks for, generated the moment a run closes.

Salary register and bank advice exported instantly
Department-wise, location-wise and entity-wise payroll breakdowns
Cost-to-company and headcount MIS, ready to circulate
Variance report comparing any cycle against any other
Every figure traceable back to a logged run
Filings
Challans
Form 16
May 2026 · filed automatically
PF · ECRFiled
ESI returnFiled
TDS · Form 24QFiled
Professional taxFiled
Labour Welfare FundFiled
Rules applied per work location
Compliance

Statutory work that runs itself.

Multi-state statutory rules, calculated to slab and filed to schedule. No separate compliance fee, no consultant retainer for routine filings.

PF, ESI, TDS, PT and LWF computed and filed each cycle
Rules applied per employee by work location, updated as states notify
Form 16 and Form 24Q generated without manual entry
Statutory registers maintained and ready to produce on inspection
How it works

Eight steps. Most of them run without you.

Step 1 of 8You set this up

Employee and salary setup

Employee master, salary structures, CTC components, statutory registrations and policy rules configured once.

Step 2 of 8

Attendance and leave inputs

Attendance, leave, LOP, overtime, incentives and reimbursements captured, or pulled from your existing HRMS or biometric system.

Step 3 of 8

Payroll calculation

Earnings, deductions, taxes and statutory contributions computed against your configured rules.

Step 4 of 8

Validation and verification

Pre-finalisation checks flag missing, inconsistent or unusual data before anything is committed.

Step 5 of 8

Approval

The run moves through your configured maker-checker workflow for HR and management sign-off.

Step 6 of 8

Finalisation

Payslips, salary statements and registers generate on approval.

Step 7 of 8

Disbursement

Bank transfer files and payout instructions issued in your bank’s format.

Step 8 of 8

Statutory and management reporting

Challans, returns, registers and MIS produced for filing and for the board pack.

1 / 8
Who it’s for

One run. Four sets of expectations, all met.

For finance
Close by lunch, and tie out afterwards

Payroll, attendance and cost data read from one ledger. Month-end reconciliation stops being a project.

For HR
Nothing to re-key

Inputs flow in from attendance and leave automatically. No exports, no reconciliation, no spreadsheet chain.

For compliance
Ready before the inspector is

Statutory registers, filing history and a complete audit trail, produced on demand rather than assembled under pressure.

For employees
Paid on the dot, with the maths shown

Same date every month, with every deduction itemised in a portal they can reach themselves.

Employee experience

Payday, minus the questions.

Your payslip, the moment it runs.

Payslips, Form 16 and tax sheets land in the app the instant payroll closes.

Every rupee, explained.

Tap any deduction to see how PF, PT and TDS were computed on your actual numbers.

Paid on the same date, every month.

Salary hits the account on schedule whether or not anyone in HR is at their desk.

Both tax regimes, compared.

See old and new side by side on your real salary and pick the one that costs you less.

Snap the bill, get reimbursed.

Photograph a receipt in the app and it flows into your next payout.

Know what changed, and why.

When the wage rules shift your basic pay and PF, the payslip shows the before and after instead of leaving you to guess.

Employer outcomes

Everything you need to run payroll properly.

Speed
Close payroll before lunch

Attendance, LOP and arrears flow in on their own. One review, then approve.

Compliance
PF, ESI, PT, LWF and TDS handled

Contributions computed, challans generated, returns prepped every cycle, across every state you operate in.

Accuracy
Numbers that tie out

Payroll, attendance and finance read the same ledger. No month-end diffs to chase.

Flexibility
Model any CTC

Build allowances, reimbursements, variable pay and revised wage structures however your policy and the law require.

Control
Nothing changes off the record

Every override stamped, approved and retained for inspection.

Continuity
Rules update before you notice

Statutory changes and state notifications applied at source, not through a support ticket.

Compliance coverage

What NavoraHR handles, specifically.

Indian payroll compliance is central law plus state law plus notification timing. Below is what the system computes, files and maintains.

Applies the unified wage definition, tests structures against the 50% wage floor, and flags employees whose allowances trigger add-back.

Computes PF and ESI on the revised wage base, provisions gratuity including one-year eligibility for fixed-term employees.

Employee and employer contributions calculated and deducted monthly. ECR generated for EPFO filing.

Contributions computed for eligible employees. Returns prepared for ESIC on schedule.

State-specific slabs applied by work location, deducted and remitted to the correct authority.

Employee and employer LWF contributions applied where the state mandates them, on the state’s own cycle.

Monthly TDS under Section 192, quarterly Form 24Q, annual Form 16, investment declarations under Form 12BB, previous employer income under Form 12B.

Gratuity provisioned monthly and settled on exit at the current wage definition.

Statutory bonus calculated against eligibility limits and disbursed through payroll.

Salary structures validated against applicable central and state notifications, with alerts when an employee falls below.

Deliverables

Every cycle, these arrive.

Processed monthly payroll
Employee payslips
Payroll register
Salary sheet
Salary statements
Bank transfer file
PF ECR challan
ESI return
Professional tax remittance data
LWF remittance data
TDS and Form 24Q data
Form 16 at year end
Statutory registers
Variance report
Cost and headcount MIS
Payroll audit report
Complete employee payroll history
Getting started

Live in a day, or live properly. Your call.

A straightforward 50-person single-state payroll can be configured and running its first cycle inside a day. Complexity changes that, and it is better to say so than to promise a number that does not hold.

What extends a timeline

  • Headcount and number of legal entities
  • Number of states, and their statutory registration status
  • Data migration from your current system, including mid-year tax and TDS history
  • Salary structure complexity and the number of pay heads
  • Integrations with attendance hardware, accounting systems and banking
  • Whether you are restructuring CTC for the wage code at the same time
What we do in every implementationParallel run against your existing payroll for one full cycle before cutover, so the first live run is a confirmation rather than a leap.
Security & trust

Payroll is the most sensitive data you hold.

Encryption in transit and at rest across payroll records, bank details and documents
Role-based access so HR, managers, finance and employees each see only their own scope
Full audit trail with every action timestamped and attributed
99.9% uptime SLA on enterprise cloud infrastructure
Continuous backups with point-in-time restore
Integrations

Connects to what finance already uses.

Tally

Payroll journals posted straight to your ledgers

Zoho Books

Salary entries auto-posted

SAP

HR and payroll data pushed to SAP ERP

Razorpay

Direct salary disbursal

HDFC Bank / ICICI Bank

Bulk salary transfers in the bank’s own file format

Slack

Payroll alerts and approvals where the team already is

Excel / Sheets

Import anything, export any report

Open API

Everything else

Inside NavoraHR: Attendance, Leave, HRMS, Employee Self Service, Letters and E-Separation all write to the same employee record. Payroll reads it directly. Nothing is exported and re-imported.

Common questions

Everything you need to know.

What is a payroll management system?
A payroll management system is software that calculates employee salaries, applies statutory deductions, files returns with government authorities and issues payslips, replacing manual spreadsheet processing. In India it must handle PF, ESI, Professional Tax, Labour Welfare Fund and TDS, apply state-specific rules by employee work location, and generate Form 16 and Form 24Q. NavoraHR covers all of this in a single monthly run.
How does NavoraHR handle the 50% wage rule under the Code on Wages?
NavoraHR tests every employee’s salary structure against the wage definition of basic pay plus dearness allowance plus retaining allowance, and flags where that falls below 50% of total remuneration. Where allowances exceed the threshold, the excess is added back into wages for PF, gratuity, bonus and leave encashment calculations. You can model the revised structure and see the per-employee cost impact before applying it to a live cycle.
Can NavoraHR settle a full and final within 48 hours?
Yes. Under the Code on Social Security, wages must be settled within two working days of an employee’s exit. NavoraHR calculates notice pay, leave encashment, gratuity, loan recoveries and statutory dues when the exit is recorded and releases the settlement as an off-cycle payout, without waiting for the next payroll cycle.
Does it handle PF, ESI, PT and TDS automatically?
Yes. Contributions and deductions are calculated to the current slab each cycle, challans and returns are generated, and rules update when the law or a state notification changes. That includes ECR for EPFO, ESI returns, state professional tax, Labour Welfare Fund where applicable, and monthly TDS with quarterly Form 24Q.
Can I run payroll across multiple states and multiple legal entities?
Yes. Professional tax, Labour Welfare Fund, minimum wage and Shops and Establishments rules are applied per employee based on work location, and separate legal entities are maintained with their own statutory registrations under one login. This matters more than usual right now, because labour code state rules are being notified at different times in different states.
How does NavoraHR handle tax for employees who join mid-year?
Previous employer income and TDS are captured through Form 12B and absorbed into the employee’s full-year projection, so monthly TDS is computed on total annual income rather than only the portion earned with you. This prevents the shortfall that otherwise surfaces in the final quarter.
What happens if I make a mistake in a payroll run?
Any run can be reversed within the cycle. Every action is recorded in the audit trail with a timestamp and the user who made it, and the variance report shows exactly what changed between one cycle and the next, so errors surface before disbursal rather than after.
How long does implementation take?
A single-entity, single-state payroll under 100 employees is typically configured and running within a day. Multi-state, multi-entity setups with data migration and integrations take longer, and every implementation includes a parallel run against your existing payroll for one full cycle before cutover.
Do I still need a CA or a compliance consultant?
NavoraHR handles routine monthly statutory computation, challan generation and return preparation without external help. Structural decisions such as how to restructure CTC for the wage code, entity-level tax positions and assessment representation remain advisory work, and the system gives your advisor clean, auditable data to work from.
Connects with

Better with the rest of the platform.

Payroll reads the same employee record every other module writes to. No syncing, no duplicate entry, no reconciliation between systems.

See it run on your own payroll.
Bring one month of your actual payroll data. We will run it alongside your current process and show you the output, the statutory position and the variance, before you commit to anything.

No credit card. Response within 24 hours.